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Previous CIRCS seminars (2003-2002)
Previous CIRCS seminars (2002-2001)
Previous CIRCS seminars
(2000) Previous CIRCS seminars
(1999) Previous CIRCS seminars
(1998) Previous CIRCS seminars
(1997) Previous CIRCS seminars
(1996) 1997 Egan Center Series
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Previous Seminars
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CIRCS
Seminars for 1999
All
talks are held at 3:45pm in room 114 of
the Dana Research Center unless otherwise
noted.
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Tuesday, December 7th, 1999
Title: "Retinal Circuits and Visual Perception" by Prof. Markus
Meister, Department of Molecular and Cellular Biology, Harvard
University
ABSTRACT: The neural processing
that leads to vision begins in the retina. In this talk I will
examine specifically how the signals traveling from the eye
to the brain encode flickering and moving stimuli. It will be
seen that retinal processing accounts for intriguing visual
illusions, and contributes to our remarkable proficiency at
intercepting moving objects.
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Tuesday, November 9th, 1999
Title: "Dynamics of Calcium Release Waves in Cells" by Dr. Igor
Mitkov, Physics Department and CIRCS, Northeastren University
ABSTRACT: To understand mechanisms
of calcium release in living cells is a challenge for physics
of biological systems, since it constitutes a basis for numerous
physiological processes. As supported by experimental evidences,
cells can sustain global oscillations and propagation of localized
pulses of calcium concentration. We present a theory which describes
these features, as well as it takes into account an important
fact of discreteness of calcium conducting ionic channels. This
fact is missing in the previous descriptions of calcium waves.
We analyze our theory both analytically and numerically and
obtain a good agreement between them.
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Tuesday, October 26,1999
Title:"Information capacity of unital quantum channels." by Prof.
Christopher King, Department of Mathematics, CIRCS, Northeastern
University
ABSTRACT: The broad setting for this talk
is quantum information theory. Quantum systems differ from classical
in two ways: measurement introduces noise, and entanglement offers
new resources. I will describe some past and present attempts
to analyse how these factors affect the information capacity of
a communication channel.
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Tuesday,
October 19, 1999
"Multiscale Modeling of Microstructural Evolution: From Atoms
to Dendrites" by Prof. Alain Karma, Department of Physics, CIRCS,
Northeastern University
ABSTRACT: One of the main
current challenge of modeling micristructural evolution is to
bridge the gap between atommistic and mircostructurl length
and time scales, both reliably and quantitaatively. I will discuss
in this talk a novel Multiscale Monte Carlo based algorirthm
that can be integrated with a phase-field modeling approach
to stimulate for the first time dendritic growth in a parameter
range where a direct quaantitative compaarison with benchmark
experiments becomes possible.
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Thursday, May 27th, 1999
"Quantum computation with mesoscopic Josephson junctions" byProf. D. Daverin,
Joint Circs and Physics Colloquium, State University of New York at Stony
Brook
ABSTRACT: In the talk, I will give brief introduction to quantum computation
and quantum dynamics of mesoscopic Josephson junctions, and discuss qubits
and quantum logic gates based on these junctions. Various dephasing mechanism
that limits junction performance as qubits but present interesting physics,
will also be discussed.
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Tuesday, May
25, 1999
"Quantum Chaos: Ergodicity, Localization, Transport, and the Theory of
Wavefunction Scarring" by Dr. Lev Kaplan, Physics Department, Harvard
University
ABSTRACT: The scar phenonmenon is the anomalous enhancement or suppression
of quantum wavefunction intensity near the unstable periodic orbits of
a classically chaotic system. It is a dramatic and visually striking example
of the influence of classical structures on quantum wavefunctions and
transport. We review recent progress in attaining a quantitative understanding
of scarring, leading to predictions about wavefunction intensity statistics,
conductances and conductance fluctuations, resonance widths and decay
rates, and other experimentally relevant quantities in quantum systems
which exhibit classical chaos. Strong deviations from the naive predictions
of random matrix theory are predicted and observed. |
Tuesday, May 18, 1999
"Quantum simulations on a quantum computer" by Dr. Ching Hua-Tseng Harvard-Smithsonian
Center for Astrophysics, Harvard University
ABSTRACT: A general scheme is presented for performing a simmulation of
the dynamics of one quantum system using another. This scheme is used
to experimentally simulate the dynamics of truncated quantum harmonic
and anharmonic oscillators using nuclear magnetic resonance. We believe
this to be the first explicit physical realization of such a simulation.
The relation to decoherence will also be discussed.
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Tuesday, May 11, 1999
"Amyloid Structural Polymorphism" by Daniel A. Kirschner, Ph.D Department
of Biology, Boston College
ABSTRACT: Alzheimer's disease (AD)
is just one example of a group of biochemically diverse conditions that
are disorders of protein metabolism, or more generally, of protein conformation,
in which soluble polypeptides polymerize to form insoluble fibrils that
accumulate as heterogeneous deposits. The amyloid fibrils associate
with or may be nucleated by other proteins in the extracellular matrix
or plasma of blood or cerebrospinal fluid. Not only are normal tissue
structure and function compromised by the deposits, but the aggregated
peptides may also be cytotoxic. The deposits may be local, confined
to single organs or tissues, or distributed throughout the body. In
addition to AD, examples of such disorders include AA and AL amyloidoses,
the transmissible spongiform encephalopathies ("mad cow disease", scrapie
in sheep, Creutzfeldt-Jakob in humans), and HuntingtonŐs disease in
humans. The amyloidoses often share certain common features Đ e.g.,
a correlation with aging; an extracellular accumulation of the amyloid;
a structural variant of a precursor protein; defective proteolytic processing;
a high local concentration of the precursor protein or fragment; an
amyloidogenic enhancing factor. The most common characteristic of amyloid,
however, is the structural organization of its constituent polypeptide
chains: namely, the (-pleated sheet conformation, and specifically the
cross-( arrangement. In this type of structure, the extended polypeptide
chains are running approximately perpendicular to rather than parallel
to the fiber axis. There has been substantial progress in understanding
the biochemistry, cell biology, and molecular biology of different amyloidoses;
however, the precise mechanism of amyloid formation and details on the
molecular organization and side chain arrangement within the fibrils
are still unclear. To understand the formation and molecular organization
of the amyloid fibrils, we have pioneered a structural neurochemical
approach based on studying synthetic peptide homologues. By correlating
results from fiber diffraction and electron microscopy, our approach
is concerned with characterizing the interrelationships among primary
sequence, peptide conformation, and morphology of the assembly.
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Tuesday, April 27, 1999
"Multidisciplinary applications of laser-polarized noble gas magnetic
resonance" by Dr. Ron Walsworth Harvard-Smithsonian Center for Astrophysics,
Harvard University
ABSTRACT: Large nuclear spin polarizations
can be created in dense samples of the spin 1/2 noble gases (3He and
129Xe) using laser optical pumping techniques. Such large spin-polarization
greatly enhances the nuclear magnetic resonance (NMR) detection sensitivity
of these noble gases, enabling high precision tests of fundamental symmetries,
practical gas-space magnetic resonance imaging (MRI), and probes of
complex system structure through measurements of restricted gas diffusion
and flow. Laser polarized noble gas NMR is a powerful new tool for biomedical
imaging, materials science, and fundamental physics. I will discuss
the research activities of my group and collaborators in each of these
areas.
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Tuesday, April 20, 1999
"Quantum effects in circuits of mesoscopic Josephson junctions" by Prof.
J. E. Mooij Visiting Professor, MIT
Professor, Delft University of Technology
ABSTRACT: In a superconductor, the
phase of the order parameter and the number of Cooper pairs are non-commuting
conjugate variables. This leads to special phenomena in circuits of
small Josephson junctions where the Josephson coupling energy (addressing
phase differences) and the Coulomb charging energy for a single excess
Cooper pair (addressing the number) are of comparable magnitude. We
have experimentally studied fluxoids (vortex-like phase excitations)
that behave as quantum particles, exhibiting interference and various
localization effects. We have also demonstrated the Heisenberg uncertainty
relation between phase and number, and observed quantum superpositions
of charges and fluxoids. We are now investigating the possibility to
use Josephson circuits for quantum computing.
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Wednesday, April 14, 1999
"Void Electromigration" by Martine Ben Amar Laboratoire de Physique
Statistique, Paris Cedex
ABSTRACT: Electromigration, that is,
the forced motion of ions under an electric current is one of failure
mechanisms in microelectronic devices. This process may induce the propagation
of voids in thin metal films, whose dynamics is often described by a
continuous model similar to the classical Hele-Shaw problem. As a consequence,
both the shape and the velocity of voids are solutions of a free boundary
problem remisniscent of the well-known Saffman-Taylor viscous instability.
We present here analytical results in the strip geometry which represents
an interconnect but is also the geometry of the linear Hele-Shaw cell.
Two cases are investigated: first, the void is assumed to travel steadily
along the axis of symmetry of the metal strip,second the void propagates
along the border. Although perhaps unrealistic the first situation is
very similar to viscous flow and the comparison between analogous results
concerning fingers or bubbles will be explained. One notes in particular
that the breakdown of analyticity of one boundary condition restricts
the space of allowed solutions in the absence of surface self-diffusion.
A more realistic situation concerns the distortion of borders whose
asymmetry is at the origin of the complete splitting of the strip.
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Tuesday, March 30, 1999
"Quantum dissipation due to the interaction with chaotic degrees-of-freedom
and the correspondence principle" by Dr. Doron Cohen Professor, Dept.
of Physics, Harvard University
ABSTRACT: Both in atomic physics and
in mesoscopic physics it is sometimes interesting to consider the energy
time-dependence of a parametrically-driven chaotic system. We assume
an Hamiltonian H(Q,P;x(t)) where x(t)=Vt. The velocity V is slow in
the classical sense but not necessarily in the quantum-mechanical sense.
We study the crossover (in time) from ballistic to diffusive energy-spreading,
and the associated irreversible growth of the average energy. The latter
has the meaning of dissipation. We define a dimensionless velocity v_{PR}
that determines the nature of the dynamics, and controls the rout towards
quantal-classical correspondence. We distinguish between a perturbative
regime and a semiclassical regime.
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Tuesday, March 30, 1999
"Hydrodynamics of Vortex Liquids in Patterned Geometries" by C. Marchetti
Professor, Dept. of Physics at Syracuse University, Visting Professor,
Lyman Laboratory of Physics, Department of Physics, Harvard
ABSTRACT: In the mixed state of cuprate
superconductors the magnetic field is concentrated in an array of flexible
flux bundles that, much like ordinary matter, can form crystalline,
liquid and glassy phases. The dynamics of flux-line arrays determines
the resistive properties of the materials and has therefore been the
focus of much attention in recent years. Various types of glasses are
also possible because of pinning in disordered samples. In particular,
the introduction of columnar damage tracks by heavy ions irradiation
yields a low-temperature "Bose-glass" phase, in which every vortex is
trapped on a columnar defect. After reviewing the rich phase diagram
of vortex arrays, I will focus on the properties of viscous flux-line
liquids, where dissipation is controlled by the liquid shear viscosity.
This important transport coefficient is predicted to diverge at the
continuous Bose-glass transition with a universal scaling exponent.
Patterned irradiation of cuprate superconductors with columnar defects
allows for a new generation of experiments that probe flux flow in narrow
geometries, where viscous effects are very important. I will show how
an analysis of flux flow in such confined geometries that combines inhomogeneous
scaling theory with the hydrodynamic of viscous vortex liquids can be
used to extract viscous critical behavior near the Bose glass transition.
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Friday, March 16, 1999
"FMRFamide-related Neuropeptide Gene Family in Caenorhabditis elegans"
by Christina Li, Assistant Professor of Biology, Boston University
ABSTRACT: Many organisms, including
mammals, use small peptides as neurotransmitters. The family of FMRFamide
(Phe-Met-Arg-Phe-NH2)-like neuropeptides, which all share a C-terminal
RFamide sequence, have been shown to have diverse functions, including
neuromodulation, cardioexcitation, and stimulation or inhibition of
muscle contraction, in many organisms. In the nematode Caenorhabditis
elegans, FMRFamide-like peptides (FaRPs) are expressed in over 50% of
the cells in the nervous system; immunoreactive neurons include motor,
sensory, and interneurons that are involved in movement, feeding, defecation,
and reproduction. At least 19 genes, designated flp-1 through flp-19,
encode FaRPs in C. elegans. Each flp gene encodes a different set of
FaRPs, yielding a predicted total of 55 distinct FaRPs. At least 16
of these flp genes are transcribed in C. elegans, and several of these
genes are alternatively spliced. Using staged RNA for reverse-transcription/polymerase
chain reactions (PCR), we determined that most flp genes are expressed
throughout development. To determine the cellular localization of specific
flp genes, reporter constructs (with the lacZ or green fluorescent protein
genes) are being made for each of the flp genes. To characterize the
function of specific flp genes, we are using PCR-based screening methods
to isolate deletion mutants. Thus far, animals carrying deletions in
four flp genes have been isolated. However, we have only seen behavioral
defects in animals in which the flp-1 gene was disrupted. flp-1 deletion
animals show multiple sensory and motor deficits that can be rescued
by germline transformation with the wild-type copy of the gene. Our
results suggest that a complex family of FaRPs acting in different subsets
of neurons have varied and sometimes overlapping functions through all
stages of development and in adulthood in C. elegans.
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Wednesday, March 10, 1999
"The Three P's Of Total Risk Management" by Andrew Lo Harris & Harris
Group Professor, MIT Sloan School of Management
Abstract: Current risk-management
practices are based on probabilities of extreme dollar losses, e.g.,
Value-at-Risk measures, but these measures capture only part of the
story. There are two other important factors that any complete risk-management
system must address: prices and preferences. Together with probabilities,
these comprise the three P's of risk management. In this talk, I will
review the three P's and discuss new research directions that focus
on each of them and how they interact to determine the risks that individuals
and corporations bear.
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March 9, 1999
"Amyloid Structural Polymorphism" by Daniel A. Kirschner Professor Department
of Biology, Boston College
Abstract: Alzheimer's disease (AD)
is just one example of a group of biochemically diverse conditions that
are disorders of protein metabolism, or more generally, of protein conformation,
in which soluble polypeptides polymerize to form insoluble fibrils that
accumulate as heterogeneous deposits. The amyloid fibrils associate
with or may be nucleated by other proteins in the extracellular matrix
or plasma of blood or cerebrospinal fluid. Not only are normal tissue
structure and function compromised by the deposits, but the aggregated
peptides may also be cytotoxic. The deposits may be local, confined
to single organs or tissues, or distributed throughout the body. In
addition to AD, examples of such disorders include AA and AL amyloidoses,
the transmissible spongiform encephalopathies ("mad cow disease", scrapie
in sheep, Creutzfeldt-Jakob in humans), and Huntington's disease in
humans.
The amyloidoses typically share certain
common features ‚ e.g., a correlation with aging; an extracellular accumulation
of the amyloid; a structural variant of a precursor protein; defective
proteolytic processing; a high local concentration of the precursor
protein or fragment; an amyloidogenic enhancing factor. The most common
characteristic of amyloid, however, is the structural organization of
its constituent polypeptide chains: namely, the ß-pleated sheet
conformation, and specifically the cross-ß arrangement. In this
type of structure, the extended polypeptide chains are running approximately
perpendicular to rather than parallel to the fiber axis. There has been
substantial progress in understanding the biochemistry, cell biology,
and molecular biology of different amyloidoses; however, the precise
mechanism of amyloid formation and details on the molecular organization
and side chain arrangement within the fibrils are still unclear.
To understand the formation and molecular
organization of the amyloid fibrils, we have pioneered a structural
neurochemical approach based on studying synthetic peptide homologues.
By correlating results from x-ray fiber diffraction and electron microscopy,
our approach is concerned with characterizing the interrelationships
among primary sequence, peptide conformation, and morphology of the
assembly. In this seminar, I will focus on the polymorphism of amyloid
structure.
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March 2, 1999
"The Accumbens Dopamine Hypothesis of Reward: Trouble in River City
(tentative title)" by James R. Stellar, Professor and Dean of the College
of Arts and Sciences
Department of Psychology, Northeastern University
ABSTRACT: Dopamine neurotransmission,
particularly in the nucleus accumbens has long been thought to be the
critical neural event for the expression of reward in the brain and
a biological site of action for most if not all drugs of abuse. Much
data supports this view. However, in the last few years, strongly contradictory
data has been generated. My laboratory has contributed to both sides
of this debate. A potential resolution comes from a relatively new concept
borrowed from the psychobiology drug addiction research: craving. This
is linked to an old concept in psychology of incentive motivation. All
three parts of this emerging story will be discussed.
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February 24, 1999
Modeling of Attractive Bose-Einstein Condensates Cristian Huepe École
normale supérieure
Paris, France
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February 23, 1999
"Investigating The Nucleation And Growth Of Zeolite Crystals: Results
From Low-Earth Orbit" by Albert Sacco, Jr. George A. Snell Chaired Professor
in Engineering Director, Center for Advanced Microgravity Materials
Processing
Northeastern University
ABSTRACT: Zeolite and zeo-type materials
form the backbone of the modern chemical process industry. A zeolite's
effectiveness is determined by its size, cation type, and location,
and the type and concentration of defects present. The ability to control
zeolite chemistry to optimize effectiveness has yet to be achieved.
The low-gravity environment (10-6 g) of low-earth orbit provides a unique
laboratory virtually free of sedimentation and convective flows. Fifty-eight
experiments crystallizing five different zeolites have been performed
on the space shuttle. An initial experiment (STS-40) involved a premixed
zeolite A solution. Triethanolamine (a chelating agent) was used to
"stabilize" the "gel" as well as to time release alumina during nucleation
and growth. Electromicrographs of both the flight and control crystals
indicated extensive intergrowths, andt heir particle size distributions
were identical. Terrestrial experiments on similar batch compositions
suggest that nucleation had occurred prior to launch even though it
was undetectable using standard XRD. When mixed on orbit (STS-50/STS-57),
in all cases where the initial nucleation event was controlled, all
zeolites crystallized grew larger than their ground-based controls,
typically 25 percent larger for zeolite A and 50 percent larger for
zeolite X. Mordenite crystals were not different in size, but they did
not agglomerate (typical on earth), and they had a different morphology.
Using a combination of IR, XRD, BET, XPS, and TEM, the flight crystals
were generally found to have fewer lattice defects. Some zeolite A crystals
appeared to be lattice defect free (SiAl = 1. 00). Particle size distributions
indicated that 30 to 40 percent fewer crystals were nucleated on orbit.
It was hypothesized that fewer nuclei were produced because reduced
convective flows reduced the rate of solubilization of the aluminosilicate
"gel" phase. To test this hypothesis terrestrially, different silica
source materials of varying pore sizes were physically modified to have
different surface areas and pore volumes. For the same overall mordenite
batch composition, reduction in surface area (affecting the rate of
solubilization) for large-pore silicas (150 A) resulted in a six-fold
increase in the time until crystallization is first seen by XRD, and
a concomitant increase in crystal size. These physically altered silicas
were used in the next flight experiments on STS-73. Five different zeolites
were crystallized on STS-73: zeolite A, zeolite X, ZSM-5, Silicalite,
and zeolite P. Data from these experiments have indicated that the zeolite
A and zeolite X crystals are twice as large in linear dimension as those
grown on STS-50/STS-57, while their degree of "perfection" appears to
be similar to the ground controls. The flight ZSM-5, Silicalite and
zeolite P appeared to be free flowing crystals of various morphologies.
High magnification TEM indicates that the flight zeolite P has significantly
fewer point and line defects than does its ground control. Preliminary
surface studies have indicated apparent differences in both the morphology
and OH concentration on the space-grown crystals. These results have
both increased understanding and posed new questions on zeolite nucleation
and growth.
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January 19, 1999
"Simulation of Coarsening in Nematic Liquid Crystals" by
Jefferey Billeter Condensed Matter Theory, Department of Physics, Brown
University
Abstract: Using the Gay-Berne model
for liquid crystal intermolecular pair potentials, we have performed
a molecular dynamics simulation of the isotropic-nematic transition
following a temperature quench and investigated the resulting defect
structures. Disclination loops are clearly evident, although the time
behavior of the line density deviates significantly from theoretical
and experimental results. The large-k exponent of the structure factor
also deviates significantly from the Porod Law prediction. We believe
that finite-size effects are a major cause of these deviations, and
our results indicate a lower limit on system size for future simulations.
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February 16, 1999
"Temporally Asymmetric Hebbian Learning and Neuronal Response Variability"
by Larry F. Abbott, Ph.D. Professor of Biology, Brandeis University
ABSTRACT: Recent experimental
data indicate that the strengthening or weakening of synaptic connections
between neurons depends on the relative timing of pre- and postsynaptic
action potentials. A Hebbian synaptic modification rule based on these
data leads to a stable state in which the excitatory and inhibitory
inputs to a neuron are balanced, producing an irregular pattern of firing.
It has been proposed that neurons in vivo operate in such a mode.
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Egan
Seminars for 1997
All
talks were held at 12:30 pm in Room 440 at the Egan Center,
Northeastern University.
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- Tuesday, January 13 "Polyelectrolyte properties
of filamentous biopolymers and distinct mechanisms of their macromolecular
assembly"
Dr. Jay X Tang, Division of Experimental Medicine Brigham and Women's
Hospital
- Friday, May 23rd "Effects of zero point vibrational
energy on the magnetic properties of low dimensionality magnetic systems"
Professor William Reiff
Department of Chemistry
- Friday, March 7th "Investigations of Heme Protein
Reaction Dynamics Using Femtosecond Coherence Spectroscopy"
Prof. Paul Champion
Department of Physics
- Friday, February 28th "Friction in known contact
geometries"
Jacqueline Krim
Department of Physics
- Friday, February 21st "Plasma, Materials, and Space"
Prof. Chung Chan
Department of Electrical and Computer Engineering
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- Friday, February 14th "TOP-C: a Task Oriented Parallel
C Interface"
Gene Cooperman
Department of Computer Science
- Friday, February 7th "Electrical Imaging of cardiac
Activity"
Dana Brooks
Department of Electrical and Computer Engineering
- Friday, January 31st "High field quasi-optical electron
magnetic resonance
of biophysical systems"
David Budil
Department of Chemistry
- Friday, January 24th "Optical Studies in High magnetic
Fields"
Clive Perry
Department of Physics
- Friday, January 10th "An overview of the robotics
and vision systems laboratory research"
Jill Crisman
Electrical and Computer Engineering
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