2005
1. Bergeon, N., R. Trivedi, B. Billia, B. Echebarria, A. Karma, S. Liu, C. Weiss and N. Mangelinck (2005). "Necessity of investigating microstructure formation during directional solidification of transparent alloys in 3D." Low Gravity Phenomena and Condensed Matter Experiments in Space 36(1): 80-85.
2. Champion, P. M. (2005). "Chemistry - Following the flow of energy in biomolecules." Science 310(5750): 980-982.
3. Fenton, F. H., E. M. Cherry, A. Karma and W. J. Rappel (2005). "Modeling wave propagation in realistic heart geometries using the phase-field method." Chaos 15(1): 013502.
4. Hakim, V. and A. Karma (2005). "Crack path prediction in anisotropic brittle materials." Physical Review Letters 95(23): 235501.
5. Lonascu, D., F. Gruia, X. Ye, A. C. Yu, F. Rosca, C. Beck, A. Demidov, J. S. Olson and P. M. Champion (2005). "Temperature-dependent studies of NO recombination to heme and heme proteins." Journal of the American Chemical Society 127(48): 16921-16934.
6. Karma, A. and A. E. Lobkovsky (2005). "Low-temperature dynamics of kinks on Ising interfaces." Physical Review E 71(3): 036114.
7. Leu, B. M., M. Z. Zgierski, G. R. A. Wyllie, M. K. Ellison, W. R. Scheidt, W. Sturhahn, E. E. Alp, S. M. Durbin and J. T. Sage (2005). "Vibrational dynamics of biological molecules: Multi-quantum contributions." Journal of Physics and Chemistry of Solids 66(12): 2250-2256.
8. Martin, S. L., M. Cruceanu, D. Branciforte, P. W. I. Li, S. C. Kwok, R. S. Hodges and M. C. Williams (2005). "LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein." Journal of Molecular Biology 348(3): 549-561.
9. McCauley, M., P. R. Hardwidge, L. J. Maher and M. C. Williams (2005). "Dual binding modes for an HMG domain from human HMGB2 on DNA." Biophysical Journal 89(1): 353-364.
10. Pant, K., R. L. Karpel, I. Rouzina and M. C. Williams (2005). "Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: Single molecule force spectroscopy measurements." Journal of Molecular Biology 349(2): 317-330.
11. Rouzina, I., K. Pant, R. L. Karpel and M. C. Williams (2005). "Theory of electrostatically regulated binding of T4 gene 32 protein to single- and double-stranded DNA." Biophysical Journal 89(3): 1941-1956.
12. Sage, J. T. (2005). "Vibrational dynamics of iron in biological molecules." Abstracts of Papers of the American Chemical Society 229: U1077-U1077.
13. Scheidt, W. R., S. M. Durbin and J. T. Sage (2005). "Nuclear resonance vibrational spectroscopy - NRVS." Journal of Inorganic Biochemistry 99(1): 60-71.
14. Shepherd, G. M. G., A. Stepanyants, I. Bureau, D. Chklovskii and K. Svoboda (2005). "Geometric and functional organization of cortical circuits." Nature Neuroscience 8(6): 782-790.
15. Shiferaw, Y., D. Sato and A. Karma (2005). "Coupled dynamics of voltage and calcium in paced cardiac cells." Physical Review E 71(2): 021903.
16. Sokoloff, J. B. (2005). "Theory of lubrication due to collective pinning." Physical Review E 71(5): 056107.
17. Sokolov, I. M., R. Metzler, K. Pant and M. C. Williams (2005). "First passage time of N excluded-volume particles on a line." Physical Review E 72(4): 041102.
18. Sokolov, I. M., R. Metzler, K. Pant and M. C. Williams (2005). "Target search of N sliding proteins on a DNA." Biophysical Journal 89(2): 895-902.
19. Stepanyants, A. and D. B. Chklovskii (2005). "Neurogeometry and potential synaptic connectivity." Trends in Neurosciences 28(7): 387-394.
20. van Thor, J. J., G. Y. Georgiev, M. Towrie and J. T. Sage (2005). "Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein." Journal of Biological Chemistry 280(39): 33652-33659.
21. Vladescu, I. D., M. J. McCauley, I. Rouzina and M. C. Williams (2005). "Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium." Physical Review Letters 95(15): 158102.
22. Weiss, J. N., Z. L. Qu, P. S. Chen, S. F. Lin, H. S. Karagueuzian, H. Hayashi, A. Garfinkel and A. Karma (2005). "The dynamics of cardiac fibrillation." Circulation 112(8): 1232-1240.
23. Ye, X., A. C. Yu, G. Y. Georgiev, F. Gruia, D. Ionascu, W. X. Cao, J. T. Sage and P. M. Champion (2005). "CO rebinding to protoheme: Investigations of the proximal and distal contributions to the geminate rebinding barrier." Journal of the American Chemical Society 127(16): 5854-5861.
24. Yu, A. C., X. Ye, D. Ionascu, W. X. Cao and P. M. Champion (2005). "Two-color pump-probe laser spectroscopy instrument with picosecond time-resolved electronic delay and extended scan range." Review of Scientific Instruments 76(11): 114301.
25. Zeng, W. Q., N. J. Silvernail, D. C. Wharton, G. Y. Georgiev, B. M. Leu, W. R. Scheidt, J. Y. Zhao, W. Sturhahn, E. E. Alp and J. T. Sage (2005). "Direct probe of iron vibrations elucidates NO activation of heme proteins." Journal of the American Chemical Society 127(32): 11200-11201.
26. Zhang, J. and J. B. Sokoloff (2005). "Adiabatic molecular-dynamics-simulation-method studies of kinetic friction." Physical Review E 71(6): 066125.